Bioconductor Model matrix

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limma model matrix linear regression

6.2 years ago agm • 0

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deseq2 model matrix experimental design multiple factor design

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by amye107 • 0

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deseq2 linear combination model matrix

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by sally_b86 • 0

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rnaseq edger statistics model matrix

updated 7.9 years ago by Steve Lianoglou ★ 13k • written 7.9 years ago by David R ▴ 90

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deseq2 design and contrast matrix model matrix

8.5 years ago mrigaya.mehra ▴ 10

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deseq2 differential gene expression model matrix

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by gregory.l.stone ▴ 10

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edger deseq2 model matrix differential expression

9.0 years ago ta65 • 0

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ballgown linear model model matrix custom model

9.5 years ago • updated 9.4 years ago sbcn ▴ 80

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limma model matrix limma design matrix complex-design

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by Guido Hooiveld ★ 4.1k

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limma limma design matrix model matrix

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by andrew.j.skelton73 ▴ 370

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edger design matrix model matrix

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by silvia.paolucci81 • 0

11 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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