Bioconductor Model matrix

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limma model matrix linear regression

6.2 years ago agm • 0

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1.9k

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deseq2 model matrix experimental design multiple factor design

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by amye107 • 0

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1.9k

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deseq2 linear combination model matrix

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by sally_b86 • 0

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1.6k

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rnaseq edger statistics model matrix

updated 8.0 years ago by Steve Lianoglou ★ 13k • written 8.0 years ago by David R ▴ 90

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30k

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deseq2 design and contrast matrix model matrix

8.6 years ago mrigaya.mehra ▴ 10

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2.3k

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deseq2 differential gene expression model matrix

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by gregory.l.stone ▴ 10

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3.1k

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edger deseq2 model matrix differential expression

9.0 years ago ta65 • 0

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3.7k

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ballgown linear model model matrix custom model

9.5 years ago • updated 9.4 years ago sbcn ▴ 80

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4.6k

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limma model matrix limma design matrix complex-design

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by Guido Hooiveld ★ 4.1k

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5.9k

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limma limma design matrix model matrix

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by andrew.j.skelton73 ▴ 370

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4.6k

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edger design matrix model matrix

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by silvia.paolucci81 • 0

11 results • Page 1 of 1

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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k

107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…