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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
5.7 years ago agm • 0
1
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2
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1.7k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
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7
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1.8k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 7.4 years ago by 43k • written 7.4 years ago by • 0
2
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4
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1.5k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.5 years ago by ★ 13k • written 7.5 years ago by ▴ 90
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6
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30k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
8.1 years ago mrigaya.mehra ▴ 10
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8
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2.1k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 10
4
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6
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2.9k
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
8.6 years ago ta65 • 0
2
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7
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3.5k
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ballgown custom models
ballgown linear model model matrix custom model
9.0 years ago • updated 8.9 years ago sbcn ▴ 80
7
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6
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4.4k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.8 years ago by ★ 28k • written 9.8 years ago by ★ 4.1k
9
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 9.9 years ago by ★ 28k • written 9.9 years ago by ▴ 370
2
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5
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4.4k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 10.0 years ago by ★ 28k • written 10.0 years ago by • 0
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Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
Comment: ComBat with repeated measures by ATpoint ★ 4.8k
It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by ATpoint ★ 4.8k
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Comment: Merging EPICV1 and V2 betas by Garbayo • 0
[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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