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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
5.5 years ago agm • 0
1
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2
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1.6k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
0
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7
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1.7k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
2
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4
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1.4k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 90
3
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6
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29k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
7.9 years ago mrigaya.mehra ▴ 10
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8
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2.0k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 10
4
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6
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2.8k
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
8.3 years ago ta65 • 0
2
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7
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3.4k
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ballgown custom models
ballgown linear model model matrix custom model
8.8 years ago • updated 8.7 years ago sbcn ▴ 80
7
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6
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4.3k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ★ 4.1k
9
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2
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5.7k
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 370
2
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5
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4.2k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 9.7 years ago by ★ 28k • written 9.7 years ago by • 0
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Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0
`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …
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scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
Answer: Understanding tximport working with salmon outputs
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
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