Showing : model matrix • reset
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma model matrix linear regression
6.3 years ago agm • 0
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2
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1.9k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
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7
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1.9k
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Model matrix not full rank
deseq2 linear combination model matrix
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
2
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4
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1.7k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 8.0 years ago by ★ 13k • written 8.0 years ago by ▴ 90
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6
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30k
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Designing a contrast in DESEQ
deseq2 design and contrast matrix model matrix
8.6 years ago mrigaya.mehra ▴ 10
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2.3k
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DESeq2 glibc error
deseq2 differential gene expression model matrix
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 10
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Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger deseq2 model matrix differential expression
9.1 years ago ta65 • 0
2
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7
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3.7k
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ballgown custom models
ballgown linear model model matrix custom model
9.6 years ago • updated 9.5 years ago sbcn ▴ 80
7
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4.6k
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Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma model matrix limma design matrix complex-design
updated 10.3 years ago by ★ 29k • written 10.3 years ago by ★ 4.1k
9
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Limma Model Matrix Understanding
limma limma design matrix model matrix
updated 10.4 years ago by ★ 29k • written 10.4 years ago by ▴ 370
2
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5
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4.6k
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design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 10.5 years ago by ★ 29k • written 10.5 years ago by • 0
11 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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